Publications

This material is presented to ensure timely dissemination of scholarly and technical work. Copyright and all rights therein are retained by authors or by other copyright holders. All persons copying this information are expected to adhere to the terms and constraints invoked by each author's copyright. In most cases, these works may not be reposted without the explicit permission of the copyright holder.

2024

Louviot F, Abdelrahman O, Abou-Mansour E, L'Haridon F, Allard PM, Falquet L & Weisskopf L (2024). Oligomycin-producing Streptomyces newly isolated from Swiss soils efficiently protect Arabidopsis thaliana against Botrytis cinerea. mSphere published online. 

Alfiky A,  Abou-Mansour E, De Vrieze M, L' Haridon F & Weisskopf L (2024). Newly isolated Trichoderma spp. show multifaceted biocontrol strategies to inhibit potato late blight causal agent Phytophthora infestans both in vitro and in planta. Phytobiomes published online. 

2023

Gillon A*, Abdelrahman O*, Abou-Mansour E, L'Haridon F, Falquet L, Allard PM & Weisskopf L (2023). Comparative genomic and metabolomic study of three Streptomyces sp. differing in biological activity. MicrobiologyOpen 12 : e1389. * equal first author contribution.

Anand A, Falquet L, Abou-mansour E, L'Haridon F, Keel C & Weisskopf L (2023). Biological hydrogen cyanide emission globally impacts the physiology of both HCN-emitting and HCN-perceiving Pseudomonas. MBio online early. 

2022

Weisskopf L (2022). Microbes to the Rescue – Exploring the Chemistry of Microbial Communication and Using it to Protect Plant Health. Chimia 76: 939.

Anand A, Weisskopf L & De Vrieze M (2022). The Gram-Negative Side of Microbial Biocontrol Agents: Pseudomonas Spp., in: Microbial Biocontrol Agents: Developing Effective Biopesticides, CABI Books, 2022, DOI: 10.1079/9781789249200.0006.

Gfeller A, Fuchsmann P, De Vrieze M, Gindro K & Weisskopf L (2022). Bacterial Volatiles Known to Inhibit Phytophthora infestans Are Emitted on Potato Leaves by Pseudomonas Strains. Microorganisms 1510.

Dubey S, Anand A, Bhattacharjee A, Khatri S, L'Haridon F, Weisskopf L & Sharma S (2022). Understanding the mechanism of action of stress-acclimatized rhizospheric microbiome towards salinity stress mitigation in Vigna radiata : A focus on the emission of volatiles. Environmental and Experimental Botany 104988.

Abdelrahman O, Yagi S, El Siddig M, El Hussein A, Germanier F, De Vrieze M, L'Haridon F & Weisskopf L (2022). Evaluating the Antagonistic Potential of Actinomycete Strains Isolated From Sudan ’ s Soils Against Phytophthora infestans. Frontiers in Microbiology 13: 827824.

Alfiky A, L'Haridon F, Abou-Mansour E & Weisskopf L (2022). Disease inhibiting effect of strain Bacillus subtilis EG21 and its metabolites against potato pathogens Phytophthora infestans and Rhizoctonia solani. Phytopathology 112: 2099-2109.

Estoppey A, Weisskopf L, Di Francesco E, Vallat-Michel A, Bindschedler S, Chain PS & Junier P  (2022). Improved methods to assess the effect of bacteria on germination of fungal spores. FEMS Microbiology Letters 369: 1–9.

2021

Synek L, Rawat A, L'Haridon F, Weisskopf L, Saad M & Hirt H (2021). Multiple strategies of plant colonization by beneficial endophytic Enterobacter sp. SA187. Environmental Microbiology 23 (10): 6223–6240.

Prigigallo MI, De Stradis A, Anand A, Mannerucci F, L'Haridon F, Weisskopf L & Bubici G (2021). Basidiomycetes are particularly sensitive to bacterial volatile compounds: mechanistic insight into the case study of Pseudomonas protegens volatilome against Heterobasidion abietinum. Frontiers in Microbiology 12:1382.

Weisskopf L, Schulz S & Garbeva P (2021). Microbial volatile organic compounds in intra-kingdom and inter-kingdom interactions. Nat. Rev. Microbiol.19: 391–404.  

Alfiky A & Weisskopf L (2021). Deciphering Trichoderma – Plant – Pathogen Interactions for Better Development of Biocontrol Applications. J. Fungi 7: 61.

2020

Anand A, Chinchilla D, Tan C, Mène-Saffrané L, L' Haridon F & Weisskopf L (2020). Contribution of Hydrogen Cyanide to the Antagonistic Activity of Pseudomonas Strains Against Phytophthora infestans. Microorganisms 8 (8): 1144. 

Bruisson S, Berg G, Garbeva P & Weisskopf L (2020). Volatile interplay between microbes -  friends and foes. In: Ruy CM, Weisskopf L & Piechulla B (eds).  Bacterial Volatile Compounds as Mediators of Airborne Interactions. Springer Singapore, in press.

Joller C, De Vrieze M, Moradi A, Fournier C, Chinchilla D, L’Haridon F, Bruisson S & Weisskopf L (2020). S-methyl Methanethiosulfonate: Promising Late Blight Inhibitor or Broad Range Toxin? Pathogens 9 (6): 496. 

Wenger A, Schmidt RS, Portmann R, Roetschi A, Eugster E, Weisskopf L & Irmler S (2020). Identification of a species-specific aminotransferase in Pediococcus acidilactici  capable of forming alpha-aminobutyrate. AMB Express 10: 100.  

De Vrieze M, Varadarajan AR, Schneeberger K, Bailly A, Rohr RP, Ahrens CH & Weisskopf L (2020). Linking comparative genomics of nine potato-associated Pseudomonas isolates with their differing biocontrol potential against late blight. Frontiers in Microbiology 11: 857.

Eida AA, Bougouffa S, L'Haridon F, Alam IS,  Weisskopf L, Bajic VB, Saad MM & Hirt H (2020). Genome Insights of the Plant-Growth Promoting Bacterium Cronobacter muytjensii JZ38 with Volatile-Mediated Antagonistic Activity Against Phytophthora infestans. Frontiers in Microbiology 11: 369. 

Garbeva P & Weisskopf L (2020). Airborne medicine – bacterial volatiles and their influence on plant health. New Phytologist 226: 32-43. 

2019

Shrivas VL, Singh U, Weisskopf L, Hariprasad P and Sharma S (2019). Effect of Organic Farming on Structural and Functional Diversity of Soil Microbiome: Benefits and Risks. In: Varma A., Tripathi S., Prasad R. (eds) Plant Biotic Interactions. Springer, Cham, Switzerland. doi: 10.1007/978-3-030-26657-8_9.

Chinchilla D, Bruisson S, Meyer S, Zühlke D, Hirschfeld C, Joller C, L'Haridon F, Mène-Saffrané L, Riedel K & Weisskopf L  (2019). A sulfur-containing volatile emitted by potato-associated bacteria confers protection against late blight through direct anti-oomycete activity. Scientific Reports 9:18778.  

Weisskopf L, Newton ILG, Berry D & Webster NS (2019). Spotlight on how microbes influence their host's behavior. Environmental Microbiology 21(9): 3185-3187.

2018

De Vrieze M, Germanier F, Vuille N & Weisskopf L (2018). Combining Different Potato-Associated Pseudomonas Strains for Improved Biocontrol of Phytophthora infestans. Frontiers in Microbiology 9: 2573.

Vionnet L, De Vrieze M, Dutartre A, Gfeller A, Luthi A, L'Haridon F &  Weisskopf L (2018). Microbial life in the grapevine: what can we expect from the leaf microbiome? OenoOne 52 (3).

2017

Bailly A & Weisskopf L (2017). Mining the volatilomes of plant-associated microbiota for new biocontrol solutions. Frontiers in Microbiology 8: 1638.

Montes Vidal D, von Rymon-Lipinski AL, Ravella S, Groenhagen U, Herrmann J, Zaburannyi N, Zarbin PHG, Varadarajan AR, Ahrens CH, Weisskopf L, Müller R & Schulz S (2017). Long-chain alkyl cyanides: unprecedented volatile compounds released by Pseudomonas and Micromonospora bacteria. Angewandte Chemie Int Ed 56: 1-6.

2016

Weisskopf L, RYU C-M, Raaijmakers JM & Garbeva P (2016). Editorial: Smelly Fumes: Volatile-Mediated Communication between Bacteria and Other Organisms. Frontiers in Microbiology 7: 2031.

Stopnisek N, Zuehlke D, Carlier A , Barberan, Fierer N, Becher D, Riedel K Eberl L & Weisskopf L. (2016). Molecular mechanisms underlying the close association between soil Burkholderia and fungi. ISME Journal 10: 253-264.

2015

Guyer A, De Vrieze M, Bönisch D, Gloor R, Musa T, Bodenhausen N, Bailly A & Weisskopf L (2015). The Anti-Phytophthora Effect of Selected Potato-Associated Pseudomonas Strains: From the Laboratory to the Field. Frontiers in Microbiology 6: 1309.

De Vrieze M, Pandey P, Bucheli TD, Varadarajan AR, Ahrens CH, Weisskopf L & Aurélien Bailly (2015). Volatile organic compounds from native potato-associated Pseudomonas as potential anti-oomycete agents.  Frontiers in Microbiology 6: 1295.

Guyer A, Jenny E, Hebeisen T, Banziger I, Kagi A, Vogelgsang S, Widmer F & Weisskopf L (2015). Loose Barley Smut: Molecular Detection Method for Seeds. Agrarforschung Schweiz 6: 534-537.

Hunziker L, Bonisch D, Groenhagen U, Bailly A, Schulz S & Weisskopf L (2015). Pseudomonas strains naturally associated with potato plants produce volatiles with high potential for inhibition of Phytophthora infestans. Applied and Environmental Microbiology 81: 821-830.

2014

Bailly A, Groenhagen U, Schulz S, Geisler M, Eberl L & Weisskopf L (2014). The inter-kingdom volatile signal indole promotes root development by interfering with auxin signalling. Plant Journal 80: 758-771.

Boenisch D, Hunziker L & Weisskopf L (2014). Bacteria from the root zone inhibit causative agent of haulm- and tuber decay. Agrarforschung Schweiz 5: 430-433.

Krebs H, Kagi A, Banziger I, Herzog C, Hebeisen T, Vogelgsang S & Weisskopf L (2014). Barley Smut: Variety susceptibility and control alternatives. Agrarforschung Schweiz 5: 374-377.

Stopnisek N, Bodenhausen N, Frey B, Fierer N, Eberl L & Weisskopf L (2014). Genus-wide acid tolerance accounts for the biogeographical distribution of soil Burkholderia populations. Environmental Microbiology 16: 1503-1512.

Kost T, Stopnisek N, Agnoli K, Eberl L & Weisskopf L (2014). Oxalotrophy, a widespread trait of plant-associated Burkholderia species, is involved in successful root colonization of lupin and maize by Burkholderia phytofirmans. Frontiers in Microbiology 4: 421.

Weisskopf L (2014). Nützliche Bakterien: Die Regulierung der Kraut. und Knollfäule. UFA Review 11: 46-47.

2013

Groenhagen U, Baumgartner R, Bailly A, Gardiner A, Eberl L, Schulz S & Weisskopf L (2013). Production of bioactive volatiles by different Burkholderia ambifaria strains. Journal of Chemical Ecology 39: 892-906.

Weisskopf L (2013). The potential of bacterial volatiles for crop protection against phytophatogenic fungi. In "Microbial pathogens and strategies for combating them: science, technology and education". Badajoz, Spain, Publ. A. Méndez-Vilas, Formatex. pp 1352-1363

Weisskopf L & Bailly A (2013). Plant growth modulation by bacterial volatiles: a focus on Burkholderia species. In Molecular Microbial Ecology of The Rhizosphere, ed F.J. de Bruijn, Wiley and Sons (online DOI: 10.1002/9781118297674.ch63).

2012

Schwager S, Lumjiaktase P, Stockli M, Weisskopf L & Eberl L (2012). The genetic basis of cadmium resistance of Burkholderia cenocepacia. Environmental Microbiology Reports 5: 562-568.

Bailly A & Weisskopf L (2012). The modulating effect of bacterial volatiles on plant growth: current knowledge and future challenges. Plant Signaling and Behavior 7(1):1-7.

Cesco S, Mimmo T, Tonon G, Tomasi N, Pinton R, Terzano R, Neumann G, Weisskopf L, Renella G, Landi L & Nannipieri P. (2012). Plant-borne flavonoids released into the rhizosphere: impact on soil bio-activities related to plant nutrition. A review. Biology and Fertility of Soils 48: 123-149.

2011

Blom D, Fabbri C, Connor EC, Schiestl FP, Klauser DR, Boller T, Eberl E & Weisskopf L (2011). Production of plant growth-modulating volatiles is widespread among rhizosphere bacteria and strongly depends on culture conditions. Environmental Microbiology 13 (11): 3047–3058.

Blom D, Fabbri C, Eberl E & Weisskopf L (2011). Volatile-mediated killing of Arabidopsis thaliana by bacterial volatiles is mainly due to hydrogen cyanide. Applied and Environmental Microbiology 77: 1000-1008.

O’Grady EP, Nguyen DT, Weisskopf L, Eberl L & Sokol PA (2011). The Burkholderia cenocepacia LysR-type transcriptional 1 regulator ShvR influences expression of quorum sensing, protease, type II secretion and afc genes. Journal of Bacteriology 193: 163-176.

Weisskopf L, Heller S & Eberl L (2011). Burkholderia species are major inhabitants of white lupin cluster roots. Applied and Environmental Microbiology 77: 7715-7720.

2010

Cesco S, Neumann G, Tomasi N, Pinton R & Weisskopf L (2010). Release of plant-borne flavonoids into the rhizosphere and their role in plant nutrition. Plant and Soil (Marschner Review) 329: 1-25.

2009

Tomasi N, Kretzschmar T, Espen L, Weisskopf L, Fuglsang AT, Palmgren MG, Neumann G, Varanini Z, Pinton R, Martinoia E, Cesco S (2009). Plasma membrane H+-ATPase-dependent citrate exudation from cluster roots of phosphate-deficient white lupin. Plant Cell and Environment 32: 465-475.

Weisskopf L, Akello P, Milleret R, Khan ZR, Gobat JM & Le Bayon RC (2009). White lupin leads to increased maize yield through a soil fertility-independent mechanism: a new candidate for fighting Striga hermonthica infestation? Plant and Soil 319: 101-114.

2008

Tomasi N, Weisskopf L, Renella G, Landi L, Pinton R, Varanini Z, Nannipieri P, Torrent J, Martinoia E & Cesco S (2008). Flavonoids of white lupin roots participate in phosphorus mobilization from soil. Soil Biology and Biochemistry 40: 1971-1974.

Weisskopf L, Le Bayon RC, Kohler F, Page V, Jossi M, Gobat JM, Martinoia E & Aragno M (2008). Spatio-temporal dynamics of bacterial communities associated with two plant species differing in organic acid secretion: a one-year microcosm study on lupin and wheat. Soil Biology and Biochemistry 40: 1772-1780.

2006

Le Bayon RC, Weisskopf L, Martinoia E, Jansa J, Frossard E, Keller F, Föllmi KB & Gobat JM (2006). Soil phosphorus uptake by continuously cropped Lupinus albus. A new microcosm design. Plant and Soil 283: 309-321.

Page V, Weisskopf L & Feller U (2006). Heavy metals in white lupin: uptake, root-to-shoot transfer and redistribution within the plant. New Phytologist 171: 329-341.

Weisskopf L, Abou-Mansour E, Fromin N, Tomasi N, Santelia D, Edelkott I, Neumann G, Aragno M, Tabacchi R & Martinoia E (2006). White lupin has developed a complex strategy to limit microbial degradation of exuded citrate required for phosphate acquisition. Plant Cell and Environment 29: 919-927.

Weisskopf L, Tomasi N, Santelia D, Martinoia E, Langlade NB, Tabacchi R & Abou-Mansour E (2006). Isoflavonoid exudation from white lupin roots is influenced by phosphate supply, root type and cluster-root stage. New Phytologist 171: 657-668.

2005

Weisskopf L, Fromin N, Tomasi N, Aragno M & Martinoia E (2005). Secretion activity of white lupin’s cluster root influences bacterial abundance, function and community structure. Plant and Soil 268: 181-194.

2002

Langlade NB, Messerli G, Weisskopf L, Plaza S, Tomasi N, Smutny J, Neumann G, Martinoia E & Massonneau A (2002). ATP citrate lyase: cloning, heterologous expression and possible implication in root organic acid metabolism and excretion. Plant Cell and Environment 25: 1561-1569.

Marschner P, Neumann G, Kania A, Weisskopf L & Lieberei R (2002). Spatial and temporal dynamics of the microbial community structure in the rhizosphere of cluster roots of white lupin (Lupinus albus L.) Plant and Soil 246: 167–174.