Margot Pâris
Postdoc
Department of Biology
Ch. Du Musée 15
1700 Fribourg
Senior Researcher
Department of Biology
Ch. Du Musée 15
1700 Fribourg
Technician
Department of Biology
Ch. Du Musée 15
1700 Fribourg
Biography
I am an evolutionary biologist interested in different aspects of adaptation and speciation: pesticide resistance evolution, genomics of local adaptation, adaptation to climate, genomics of speciation, evolution of key innovation, phylogenomics, plant domestication, reproductive isolation, genome evolution,...
I am currently working/having fun in Prof. Thomas Flatt's team, focussing on climate adaptation and life-history clines, chromosomal inversion, and evolution of aging.
Research and publications
- Publications
2022
Sanín, Borchsenius, Paris, Carvalho-Madrigal, Gómez Hoyos, Cardona, Arcila Marín, Ospina, Hoyos-Gómez, Manrique, Bernal (2022). The Tracking of Moist Habitats Allowed Aiphanes (Arecaceae) to Cover the Elevation Gradient of the Northern Andes. Frontiers in Plant Science, 27;13:881879. http://doi.org/10.3389/fpls.2022.881879.
Sanín, Cardona, Valencia-Montoya, Torres Jiménez, Carvalho-Madrigal, Gómez, Bacon, Roquemen Tangarife, Jaramillo, Zapata, Valencia, Arboleda Valencia, Vargas, Paris (2022). Volcanic events coincide with plant dispersal across the Northern Andes. Global and Planetary Change, 210:103757, https://doi.org/10.1016/j.gloplacha.2022.103757.
Sanín, Mejía-Franco, Paris, Valencia-Montoya, Salamin, Kessler, Olivares, Jaramillo, Cardona (2022). Geogenomics of montane palms points to Miocene– Pliocene Andean segmentation related to strike-slip tectonics. Journal of Biogeography, 00, 1–15, https://doi. org/10.1111/jbi.14327.
2021
Yardeni, Viruel, Paris, Hess, Crego, de la Harpe, Rivera, Barfuss, Till, Guzmán‐Jacob, Krömer, Lexer, O. Paun, Leroy (2021). Taxon-specific or universal? Using target capture to study the evolutionary history of rapid radiations. Molecular Ecology Resources, https://doi.org/10.1111/1755-0998.13523.
Kapun, Nunez, Bogaerts-Márquez, Murga-Moreno, Paris*, Outten, Coronado-Zamora, …., Petrov, Schmidt, Gonzalez, Flatt, Bergland (2021) Drosophila Evolution over Space and Time (DEST): A New Population Genomics Resource. Molecular Biology and Evolution, 38(12):5782–5805. (*M Paris is co-first author).
Loiseau, Mota Machado, Paris, Koubínová, Dexter, Versieux, Lexer and Salamin (2021). Genome Skimming Reveals Widespread Hybridization in a Neotropical Flowering Plant Radiation. Frontiers in Ecology and Evolution, 9:668281. doi: 10.3389/fevo.2021.668281.
Nunez, Paris, Machado, Bogaerts, Gonzalez, Flatt, Coronado, Kapun, Schmidt, Petrov, Alan Bergland (2021). Note: Updating the metadata of four misidentified samples in the DrosRTEC dataset. bioRxiv, DOI: 10.1101/2021.01.26.428249.
2020
de La Harpe, Paris*, Hess, Barfuss, Serrano-Serrano, Ghatak, Chaturvedi, Weckwerth, Till, Salamin, Wai, Ming & Lexer (2020). Genomic footprints of repeated evolution of CAM photosynthesis in tillandsioid bromeliads. Plant, Cell & Environment, 43:12. (*M Paris is co-first author).
Machado, Loiseau, Paris, Weigand, Versieux, Stehmann, Lexer, Salamin (2020). Systematics of Vriesea (Bromeliaceae): phylogenetic relationships based on nuclear gene and partial plastome sequences. Botanical Journal of the Linnean Society, boz102.
2019
Chen, VanBuren, Paris*, Zhou, [...], Bennetzen, Lexer, Ming (In Press). The bracteatus pineapple genome and domestication of clonally propagated crops. Nature Genetics, 51, 1549–1558. (*M Paris is co-first author).
Loiseau, Olivares, Paris, de la Harpe, [...], Lexer, Kessler & Salamin (2019). Targeted capture of hundreds of nuclear genes unravels phylogenetic relationships of the diverse Neotropical palm tribe Geonomateae. Frontiers in Plant Science, doi: 10.3389/fpls.2019.00864.
de La Harpe Hess, Loiseau, Salamin Lexer & Paris (2018). A dedicated target capture approach reveals variable genetic markers across micro- and macro-evolutionary time scales in palms. Molecular Ecology Resources, 19(1):221-234.
2018
Roth, Florez‐Rueda, Paris & Städler (2018). Wild tomato endosperm transcriptomes reveal common roles of genomic imprinting in both nuclear and cellular endosperm. The plant journal, 95(6):1084-1101.
2017
de La Harpe, Paris, Karger, Rolland, Kessler, Salamin & Lexer (2017). Molecular ecology studies of species radiations: current research gaps, opportunities and challenges. Molecular Ecology, 26(10):2608-2622.
Roth, Florez-Rueda, Griesser, Paris, Städler (2017). Incidence and developmental timing of endosperm failure in post-zygotic isolation between wild tomato lineages. Annals of botany, 121(1):107-118.
Christe, Stölting, Paris, Fraїsse, Bierne & Lexer (2017). Adaptive evolution and segregating load contribute to the genomic landscape of divergence in two tree species connected by episodic gene flow. Molecular ecology, 26(1):59-76.
2016
Florez-Rueda, Paris, Schmidt, Widmer, Grossniklaus & Städler (2016). Genomic Imprinting in the Endosperm Is Systematically Perturbed in Abortive Hybrid Tomato Seeds. Molecular Biology and Evolution, 33(11):2935-2946.
Lexer, Marthaler, Humbert, Barbará, de la Harpe, Bossolini, Paris, Martinelli, Versieux (2016). Gene flow and diversification in a species complex of Alcantarea inselberg bromeliads. Botanical Journal of the Linnean Society, 181: 505-520.
2015
Stölting, Paris, Meier, Heinze, Castiglione, Bartha & Lexer (2015). Genome-wide patterns of differentiation and spatially varying selection between postglacial recolonization lineages of Populus alba (Salicaceae), a widespread forest tree. New Phytologist, 207:723-734.
Bonin, Paris, Frerot, Bianco, Tetreau & Despres (2015). The genetic architecture of a complex trait: Resistance to multiple toxins produced by Bacillus thuringiensis israelensis In the dengue and yellow fever vector, the mosquito Aedes aegypti. Infection genetics and Evolution, 35:204-213.
2014
Després, Stalinski, Faucon, Navratil, Viari, Paris, Tetreau, Poupardin, Riaz, Bonin, Reynaud, David (2014). Chemical and biological insecticides select distinct gene expression patterns in Aedes aegypti mosquito. Biology Letters, 10:20140716.
Després, Stalinski, Tetreau, Paris, Bonin, Navratil, Reynaud, David (2014). Gene expression patterns and sequence polymorphisms associated with mosquito resistance to Bacillus thuringiensis israelensis toxins. BMC Genomics, 15:926.
Duchet, Tetreau, Albane, Rey, Besnard, Perrin, Paris, David, Lagneau & Després (2014). Persistence and recycling of bioinsecticidal Bti spores in contrasted environments: evidence from laboratory and field trials. Microbial Ecology, 67:57-586.
2013
Marcombe, Paris *, Paupy, Bringuier, Yebakima, Chamdre, David, Corbel & Després (2013). Insecticide-driven patterns of genetic variation in the dengue vector Aedes aegypti in Martinique Island. PLoS ONE, 8:e77857. (*M Paris is co-first author).
Paris, Marcombe, Coissac, Corbel, David & Després (2013). Investigating the genetics of Bti resistance using mRNA tag sequencing: application on laboratory strains and natural populations of the dengue vector Aedes aegypti. Evolutionary Applications, 6(7):1012-1027.
2012
Stadler, Florez-Rueda & Paris (2012). Testing for “Snowballing” Hybrid Incompatibilities in Solanum: Impact of Ancestral Polymorphism and Divergence Estimates. Molecular Biology and Evolution, 29:31-4.
Paris & Després (2012). Identifying insecticide resistance genes in mosquito by combining AFLP genome scans and 454 pyrosequencing. Molecular Ecology, 21:1672-86.
Boyer, Paris*, Jego, Lemperière & Ravanel (2012). Influence of insecticide Bacillus thuringiensis var. israelensis treatments on resistance and enzyme activities in Aedes rusticus larvae (Diptera: Culicidae). Biological Control, 62:75-8. (*M Paris is co-first author).
Paris, Melodelima, Coissac, Tetreau, Reynaud, David & Després (2012). Transcription profiling of resistance to Bti toxins in the mosquito Aedes aegypti using next-generation sequencing. Journal of Invertebrate Pathology, 109:201-208.
Paris & Després (2012). ISIF (In SIlico Fingerprinting): a user-friendly in silico AFLP program. In "Data Production and Analysis in Population Genomics" (Bonin A, Pompanon F eds). Methods in Molecular Biology Series, Humana Press, 888:55-64.
Paris, Meyer, Blassiau, Coissac, Taberlet & Després (2012). Two methods to easily obtain nucleotide sequences from AFLP loci of interest. In "Data Production and Analysis in Population Genomics" (Bonin A, Pompanon F eds). Methods in Molecular Biology Series, Humana Press, 888:91-108.
Tetreau, Bayyareddy, Jones, Stalinski, Riaz, Paris, David, Adang & Després (2012). Larval midgut modifications associated with Bti resistance in the yellow fever mosquito using proteomic and transcriptomic approaches. BMC Genomics, 13:248.
2011
Paris, David & Després (2011). Fitness costs of resistance to Bti toxins in the dengue vector Aedes aegypti. Ecotoxicology, 20:1184-1194.
Paris, Tetreau, Laurent, Lelu, Després & David (2011). Bti persistence in environment induces resistance to multiple Bti toxins. Pest Management Science, 67:122-128.
2010
Paris, Bonnes, Ficetola, Poncet & Després (2010). Amplified fragment length homoplasy: in silico analysis for model and non-model species. BMC Genomics, 11:287.
Paris, Boyer, Bonin, Collado, David & Després (2010). Genome scan in the mosquito Aedes rusticus: population structure and detection of positive selection after insecticide treatment. Molecular Ecology, 19:325-337.
2009
Bonin, Paris*, Tetreau, David & Després (2009). Candidate genes revealed by a genome scan for mosquito resistance to a bacterial insecticide: sequence and gene expression variation. BMC Genomics, 10:551. (*M Paris is co-first author).
2008
Paris, Roux, Berard & Reboud (2008). The effect of genetic background on herbicide resistance fitness cost and its associated dominance in Arabidopsis thaliana. Heredity, 101:499-506.
Tilquin, Paris, Reynaud, Després, Ravanel, Geremia & Gury (2008). Long-lasting persistence of Bacillus thuringiensis sp. israelensis (Bti) in mosquito natural habitats. PLoS ONE, 3(10): e3432.
Bonin, Paris, Tetreau, Després, David & Kilian (2008). A MITE-based genotyping method to reveal hundreds of DNA polymorphisms in an animal organism after a few generations of artificial selection. BMC Genomics, 9:459.
Roux, Paris & Reboud (2008). Delaying weed adaptation to herbicide by environmental heterogeneity: a simulation approach. Pest Management science, 64:16-29.